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Cy7.5 (Cyanine 7.5)

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picture of Cy7.5 (Cyanine 7.5)

Modification : Cy7.5 NHS

Catalog Reference Number
Category
Modification Code
5 Prime
3 Prime
Internal
Molecular Weight (mw)
Extinction Coeficient (ec)
Technical Info (pdf)
Absorbance MAX
Emission MAX
Absorbance EC



26-6498
Fluorescent Dyes
[cy7.5-N]
Y
Y
Y
664.91
223000
PS26-6498.pdf
788
808
-


Catalog NoScalePrice
26-6498-0550 nmol$325.20
26-6498-02200 nmol$325.20
26-6498-011 umol$422.76
26-6498-032 umol$634.14
26-6498-1010 umol$3,382.08
26-6498-1515 umol$4,227.60
Related Modifications
Cy5-3' Cy3-5' Cy2 NHS
Cy5.5 Cy7 NHS Cy3 NHS
Cy3.5

Cy7.5 modification is a post synthesis conjugation to a primary amino group thus an additional modification with an amino group is required. A C6 or C12 amino group can be placed at the 5' or for the 3' end a C3 or C7 amino and for internal positions an amino modified base is used, e.g Amino dT C6.

YIELD
NHS based modifications are post synthesis conjugation performed using a primary amino group. The yield is lower as compared to direct automated coupling of modifications that are available as amidites. Approximate yield for various scales are given below.

~2 nmol final yield for 50 nmol scale synthesis.
~5 nmol final yield for 200 nmol scale synthesis.
~16 nmol final yield for 1 umol scale synthesis

Cyanine 7.5 (Cy7.5) NHS ester is a fluorescent dye that belongs to the Cyanine family of synthetic polymethine dyes. Cy7.5 is reactive, water-soluble, and has an absorbance maximum of 788 nm and an emission maximum of 808 nm, which is in the near IR. It is available as an NHS ester, and is used to fluorescently label oligonucleotides at either the 5' or 3' end, or internally. As a near IR dye, Cy7.5 has very little background fluorescence associated with it (1). It is thus an excellent choice for labeling oligo probes slated for in vivo applications, because the minimal scattering and absorption of near-IR photons by cellular tissue ensures higher S/N ratio, and better sensitivity. For example, Fluorescent Resonance Energy Transfer (FRET) oligonucleotide duplexes using Cy5.5 as the donor on one strand and Cy7.5 as the acceptor on the complementary strand have been used to detect and characterize transcription factor NF-kappaB p50 protein binding to DNA (2)

Caution: Cy7.5 is intensely colored and very reactive. Care should be exercised when handling the vial containing the C7.5-labeled oligo to avoid staining clothing, skin, and other items. Also, because Cy7.5 is in the form of an NHS ester, the oligo first must be synthesized with an Amino C6 Linker (for the ends) or the Amino C6 version of the base phosphoramidite (for internal labeling). The Cy7.5-NHS ester is then manually attached to the oligo through the amino group in a separate reaction post-synthesis.

References
1. Benson, R.C., Kues, H.A. Absorption and Fluorescence Properties of Cyanine Dyes.J. Chem. Eng. Data (1977), 22: 379-383.
2. Zhang, S., Metelev, V., Tabatadze, D., Zamecnik, P.C., Bogdanov, A. Fluorescence resonance energy transfer in near-infrared fluorescent oligonucleotide probes for detecting protein-DNA interactions. Proc. Nat. Acad. Sci. USA. (2008), 105: 4156-4161.
- Cy7.5 (Cyanine 7.5)

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